rs29199468 SNP Detail

Summary

• ID
  rs29199468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53377285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCCGCT GTGTTGTGGG
  CATGGGGGGG AATGCTGTAC TGTGGGCATA GGGGTGCTGT GCTATGGGCA TGGGAGATGC
  TGTGCTGTGG GCATGGGGAG TGCTATGCTG TGGGCACGCA GGATGCCGCT GTGCCAGGTG
  GTCCCTGGAA CTCTTCCCTG GCTGCAGTAA GGAGTGTAAG CCCATCCAGG GGGAAGGCAC
  R
  ATGAGATAGT TTCTTAGAAT AATATGTATT TTTAATATTT AAAGGTGCAC CAGAAAGAAA
  ACAAATGTGT TTCAAAGCAA AAATCTGAAG GGACACTTGT GTCAGAAGTG AAGAGGCATC
  CAGCCATGCA GGGAAGACCA TTTGCGGTGC AGATTCCAGT GTCTCAAAAC GCTCAAAACT
  CCAAGAATGA AAAATGATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39016146	mCV22709043	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29199468					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53377285 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	within coordinates
Rr267617	regulatory region 267617	717 bp proximal