rs29199797 SNP Detail

Summary

• ID
  rs29199797
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20972524 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATAGG TGGGAAGAGA GGCAGAGGGA
  K
  CAGAAAATAG CCTCGTGAAG GAGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss39019323	mCV24837320	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29199797					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20972524 () rs orientation: reverse

Symbol	Name	Function Class
3110053B16Rik	RIKEN cDNA 3110053B16 gene	1261 bp upstream
Cpgi4472	CpG island 4472	999 bp distal
Rr463638	regulatory region 463638	1479 bp distal
Rr463639	regulatory region 463639	771 bp distal
Rr463640	regulatory region 463640	1033 bp distal
Rr463641	regulatory region 463641	986 bp distal
Tssr115849	transcription start site region 115849	1440 bp upstream
Tssr115850	transcription start site region 115850	1287 bp upstream
Tssr115851	transcription start site region 115851	1250 bp upstream