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rs29199986 SNP Detail
Summary
  • ID
    rs29199986
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:53859578 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCGGCTCACA GGACTCCTGT
    TTGCAGAGAG CTGGGCACTT CTCTGTGCTG CTGCCTCATA TGGCATCTTT TTATTAACCT
    CCTGTTTCAT GTGTTTATTT TCCCAGTAAG CTTTTTTTTT CTTTCCCTCC CCGTATCAGT
    TACCAACTAG TTCTAGACCC ATGGTTGCAA GAAAGCTGTC GAGATACGGT TAGCTTGCTC
    Y
    GTCCCTTCTC TCTGTCTCTA TATGTTTGTC TCTCTGTCTC TATGTCTCTG TCTCTGTTTC
    TATCTGTCCA CACATAAACA ATAGGTATGC GCAGTTTTAC CTGGCATCTC TAACTACAGC
    CCTCAATCTC CAAAGCCCAC TGGCTGCAAA GGAAACTATT CACTCATGCA TAGTAAATAA
    CATACCTTTT AGTTTTGTTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss39015785 mCV22363455 ABI CRAMUS_MOUSE f SNP T C C
ss47092481 NES11250515 PERLEGEN MM_PANEL2 f SNP T C C C C C C C C T C C T C
ss137760071 ENSMUSSNP5986768 ENSEMBL ENSEMBL_Sanger f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs29199986 SNP T T C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47092481 NES11250515 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:53859578 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Npas3 neuronal PAS domain protein 3 within coordinates
Rr260842 regulatory region 260842 423 bp proximal
Rr267638 regulatory region 267638 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory