rs29199986 SNP Detail

Summary

• ID
  rs29199986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53859578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCTCACA GGACTCCTGT
  TTGCAGAGAG CTGGGCACTT CTCTGTGCTG CTGCCTCATA TGGCATCTTT TTATTAACCT
  CCTGTTTCAT GTGTTTATTT TCCCAGTAAG CTTTTTTTTT CTTTCCCTCC CCGTATCAGT
  TACCAACTAG TTCTAGACCC ATGGTTGCAA GAAAGCTGTC GAGATACGGT TAGCTTGCTC
  Y
  GTCCCTTCTC TCTGTCTCTA TATGTTTGTC TCTCTGTCTC TATGTCTCTG TCTCTGTTTC
  TATCTGTCCA CACATAAACA ATAGGTATGC GCAGTTTTAC CTGGCATCTC TAACTACAGC
  CCTCAATCTC CAAAGCCCAC TGGCTGCAAA GGAAACTATT CACTCATGCA TAGTAAATAA
  CATACCTTTT AGTTTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39015785	mCV22363455	ABI	CRAMUS_MOUSE	f	SNP		T	C				C
ss47092481	NES11250515	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C		C	C	C	C	T	C	C	T	C
ss137760071	ENSMUSSNP5986768	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29199986					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092481	NES11250515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53859578 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	423 bp proximal
Rr267638	regulatory region 267638	within coordinates