rs29200471 SNP Detail

Summary

• ID
  rs29200471
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111502740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT TCCTCAGTAT TCAAGGTCTT
  M
  TTAAAGCTGT AGGATATTAG AATCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39018939	mCV24937718	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C	A
ss138696506	ENSMUSSNP2322653	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
ss324159934	CHEV_12_112774517	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29200471					SNP	C	C	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111502740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	1141 bp proximal
Eif5	eukaryotic translation initiation factor 5	1795 bp upstream
Gm56529	predicted gene, 56529	738 bp upstream
Gm56546	predicted gene, 56546	711 bp downstream
Gm58608	predicted gene, 58608	1710 bp upstream
Rr403512	regulatory region 403512	1521 bp upstream
Rr473211	regulatory region 473211	762 bp distal
Rr473212	regulatory region 473212	261 bp distal
Rr473213	regulatory region 473213	1220 bp proximal
Tssr115316	transcription start site region 115316	646 bp downstream
Tssr115317	transcription start site region 115317	260 bp downstream
Tssr115318	transcription start site region 115318	195 bp downstream
Tssr115319	transcription start site region 115319	886 bp upstream
Tssr115320	transcription start site region 115320	1843 bp upstream
Tssr115321	transcription start site region 115321	1958 bp upstream
Tssr117828	transcription start site region 117828	1611 bp downstream