rs29201049 SNP Detail

Summary

• ID
  rs29201049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:61648705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTAAATTA TCCTTTCCCA CTGAGGCTAG ACAAGGCAGT
  CCTCTGCTAC ATCTGTAGAG TGAACCAAGG ACTTGGTCAT GCATGCTCTT TGATTTGCAG
  Y
  TTAGTCCCTT TGAGATTGGA GAGGGCCATG TTAGTTGATA CTGTTGTTTC TACAGGATTG
  TCATCCCTTT CAGCTCCTTC AATCCTATCC CTGATGGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39019157	mCV22338415	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss137814999	ENSMUSSNP4618166	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29201049					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:61648705 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrfn5	leucine rich repeat and fibronectin type III domain containing 5			Intron
				Noncoding-Transcript-Variant
Tssr113582	transcription start site region 113582			1961 bp upstream