rs29202888 SNP Detail

Summary

• ID
  rs29202888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52654309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCTCTT TCCTTCACAC
  CACTGAGTAC CGTTAAGTCA ATACTTTTTT CAATGGGTTA TGAAGGAAAA AGACTTTAAG
  TCTATCATTT CACAACCACA CTTCTGAGTT GTCTTTCTGC CATAGCAGGA TAGTACACAC
  TGATTGGTAG AAAGTCAACT TGGCTGTAGT TCTTTTTATT CACAGGAAAG GAACATCCTG
  Y
  GCTCTGACAC TCTTTAAAAG CAAGAACAAG AAAAATGTAA CATCCACCGC AAGTTATTTC
  CTGTTCAGGA ATTTTGCTCT CATTTAAAAG AGAAGCGACT CAACCCAAAT CCTTACATCC
  TCCTTGGCAG GAAGAGCTGA GTCATCACCG CACCTATGAT GGATGTGCTT CATCTCCTCT
  GACATGGATA AGCTCAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39018397	mCV22548524	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss137738408	ENSMUSSNP6563571	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29202888					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52654309 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Gm59577	predicted gene, 59577	1717 bp upstream
Rr466028	regulatory region 466028	1866 bp distal
Tssr113445	transcription start site region 113445	112 bp upstream