rs29203202 SNP Detail

Summary

• ID
  rs29203202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107892766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCAACC GTTCAATTTT
  GTGGTCAGAC CAGGTGTGCA AGGTCAGGCT GGGAGAAACA GCCACCCAGC CCCGAAACAA
  AGAGAAATTG CTGACCGAGG GGCTGATCCG AGGAGGGTGA GAACAGAGGG GTTTGTCACA
  GAGAGTGGGG GAGGACAGGG CAAAGGGCAC AGGTGATCTT ACAAATGACG ACGGTTCCCC
  Y
  GGAGTGTCTA CAACTACAGT TGGTCACCCT CAGAACCCTG GCCTCCCACG AAACCTTCAC
  ATTCATGGAA GATCACCTAA GGTTTCTACA TAGTCAGACC CCGGGCAACC TGCGTGTCGC
  AGGCCTCTCT GAACCACATG TCTCCAGTGG GCTTTTCTTC ATGCGTGTGG GGGTATGCAC
  ACACGTTCTT GTATAAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss39019511	mCV22553168	ABI	CRAMUS_MOUSE	f	SNP		C	C			C		T
ss47276409	NES11395033	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C		C	T	C		C		C
ss138671187	ENSMUSSNP4217866	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss324151833	CHEV_12_109164717	CHEVERUD	SCREENING_POP	f	SNP										T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs29203202					SNP	C	C	C	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276409	NES11395033	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107892766 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr369605	regulatory region 369605	59 bp downstream
Rr369606	regulatory region 369606	1542 bp upstream
Rr472387	regulatory region 472387	990 bp proximal