rs29204328 SNP Detail

Summary

• ID
  rs29204328
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:29584563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAGATTTT CTGAGATACA TCACCTAGCG GGTAGCAGCC
  AACAGTAAGC CTGCGTATTT ACAGTTCTCA TCTATTACAT TAAATACAGC ACTGCACATC
  W
  CACACTCCGC TCTAGAGATT TAGAGGCCTG TGGGTACAGT GTAGGAAGCA CACAGCACAC
  ATCCCAATCT TGCCTGACTA CTGAAAGCCT AGTAAACAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39020995	mCV22619849	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss137527442	ENSMUSSNP5877734	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323979705	CHEV_12_30219429	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29204328					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29584563 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4517	CpG island 4517			185 bp proximal
Myt1l	myelin transcription factor 1-like			Intron
				mRNA-UTR
Rr464425	regulatory region 464425			624 bp distal
Rr464426	regulatory region 464426			within coordinates
Rr464427	regulatory region 464427			62 bp proximal
Rr464428	regulatory region 464428			365 bp proximal
Tssr113063	transcription start site region 113063			1273 bp downstream
Tssr113064	transcription start site region 113064			1249 bp downstream
Tssr113065	transcription start site region 113065			1200 bp downstream
Tssr113066	transcription start site region 113066			1118 bp downstream
Tssr113067	transcription start site region 113067			1097 bp downstream
Tssr113068	transcription start site region 113068			1072 bp downstream
Tssr113069	transcription start site region 113069			within coordinates
Tssr113070	transcription start site region 113070			152 bp upstream
Tssr113071	transcription start site region 113071			283 bp upstream
Tssr113072	transcription start site region 113072			617 bp upstream
Tssr113073	transcription start site region 113073			645 bp upstream