rs29204978 SNP Detail

Summary

• ID
  rs29204978
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108624837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTCAGT TATTGAGTTT
  CTCTGGAGCA AGTTGCCTTC CATATCTGTA TTTATCTACA CCCTAAGAGA CTGACATGCA
  AGTGTTTGTG GTGCATGCAT GAGCGAGTGA GCGAGTGGGT TCACCATGTG TTCTTCCATT
  GTATTGTGCA CCTTGCAAAC ATACCCCTCG CTTCCTGCTT CTGTACCCTC TCCTGAAGAC
  M
  ACGATGAAGC TCCTGAACCG CCAGCACCAT TTGCCATCTG TGAAAATGGG CTCAAGGTGA
  GGGGTGCTAT CTGTGATTGA GGGACATGGT CAATGGAATT GTCTCACACA GAAATCGCAC
  CCGTCACCTT GGCCTGCTGA GCACCACCAG AACCAAGAAG CACAGCACCC CAAACCAAGC
  AGCAGCCCTG GTGAAGTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39023324	mCV24944380	ABI	CRAMUS_MOUSE	f	SNP		C	A					C
ss51047117	NES14373346	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C	C		C	C	C	C		C	C	C	C		C
ss138677508	ENSMUSSNP7073034	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss324154906	CHEV_12_109896788	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29204978					SNP	C	C	A	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51047117	NES14373346	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108624837 () rs orientation: forward

Symbol	Name	Function Class
Evl	Ena-vasodilator stimulated phosphoprotein	within coordinates
Mir342	microRNA 342	42 bp upstream
Rr472585	regulatory region 472585	756 bp distal
Rr472586	regulatory region 472586	994 bp distal
Tssr114995	transcription start site region 114995	101 bp upstream