rs29206074 SNP Detail

Summary

• ID
  rs29206074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110341635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGGATG GTCGGGTGAA
  GGAAAGGTAA GGGGTTATTG CTTTTCGTTT GGCCCAAGCT GGGAACCACT GGAGGTTGAA
  CTGTGAACTT GTTCCAGCTT TCCTCTGGAC CTGGATGTCC CACCTTTGCA GTGAGGTGCT
  ACAAGGTACC CCAGTAGGAG TGTGCAGAAG GTGGGGTGGG GGGGGAGGCC AGCTCCAGGA
  Y
  CCAGCTCCAG GTCAGATTGG GTCAGCAGCG TCGCCATGCA ACGGGCGCCA GAATGAGGCT
  TATGCGTCTG CCTCCTGTCT GGGTCCTGCC CCAGGAGGGA CTGACAGGGC TATTATTGCT
  GTTCTTGCGC AGGGCCACTC AGACACCAGC TAATTTGTTT CAATCGCACC CCCTCCCTTA
  TTGATCAGTG CTTTCGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39024150	mCV23148371	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss138689924	ENSMUSSNP4731569	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29206074					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110341635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5113	CpG island 5113	1382 bp distal
Rr472872	regulatory region 472872	1174 bp distal
Rr472873	regulatory region 472873	1601 bp distal
Rr472874	regulatory region 472874	within coordinates
Rr472875	regulatory region 472875	1263 bp proximal
Rr472876	regulatory region 472876	1546 bp proximal
Tssr115196	transcription start site region 115196	312 bp upstream