rs29206396 SNP Detail

Summary

• ID
  rs29206396
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76722810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCTCTTG ACTGTCACAG
  CTTCCCAAGT GCTGGGATTA CAGATACACC CCCATGCCCG ACTATCTTCA CATCTCTTTC
  TCTTTTAAAA ATATTTTAAT TATGTGTATG TGTGTGCATG TCACATGCAT GCATGTGTCC
  TTGGAGGCCC AAACCATCAG ATCTTAGACT TATACACAAT TAGAAACCAT CTGAAGTCGG
  W
  GCTGAGCCAC CCCCCAACAC ACACACAACT CAGGCAGCCA TCTCTACAGT CAGTATCCTT
  AATATTTCTC ACAATTATCA AATCATTTGT CTATATGTAT AGTCACTTCA GGATGTGATT
  CCTCCCCACA TCTCCCAAGT CTGGCATCAT GACGCCTAAT CAGGTTTGTG TTGAGCACCT
  CATCTTTGAA GGCCTCAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39021363	mCV23154853	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29206396					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76722810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4784	CpG island 4784	479 bp proximal
Gm60317	predicted gene, 60317	238 bp upstream
Rr468227	regulatory region 468227	1476 bp distal
Rr468228	regulatory region 468228	183 bp distal
Rr468229	regulatory region 468229	427 bp proximal
Rr468230	regulatory region 468230	1164 bp proximal
Sptb	spectrin beta, erythrocytic	within coordinates
Tssr113983	transcription start site region 113983	260 bp upstream