rs29207162 SNP Detail

Summary

• ID
  rs29207162
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112979372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCTGTC TGTGGCTTTG
  GGAAAGGAAG GATGGATCTG AGGGGCATCT GGAGGACTGA GACCTGAGGG TCAGCTTTTG
  CCTCAGTGGG AGCATCTCCC AGGCCCCTAA AGCAGGGTGG GGGGAGGGAG AGATGAACTG
  ATCTCCACAC TTAATTCTGG CTCTCTACAG CATTGCCCTG AGACTTCACA CTGGCCCTTG
  W
  ATTCCTTTAG CAGTCTCTGA GTTCCCTTAA TGAGAGCCAA GGGTCCCCAT GCCCCCCACC
  CCATACACCA GTCAGCCTTT CTCTTTCTCC CTCCCTCTTC TGTTCCCCCT TCCTTCTTTT
  TCAGAAACAC TGAGGCTGTT TGAACTCCTA TGCTCTTGTG ATCCACATCC CCAACACACA
  CTTGAACTTC TTTTAGAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39024880	mCV24485581	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss138730674	ENSMUSSNP2289822	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29207162					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112979372 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5198	CpG island 5198	533 bp distal
Gm61130	predicted gene, 61130	1444 bp upstream
Pacs2	phosphofurin acidic cluster sorting protein 2	within coordinates
Tssr115451	transcription start site region 115451	1282 bp downstream
Tssr115452	transcription start site region 115452	1239 bp downstream
Tssr115453	transcription start site region 115453	1213 bp downstream
Tssr115454	transcription start site region 115454	1195 bp downstream
Tssr115455	transcription start site region 115455	1184 bp downstream
Tssr117933	transcription start site region 117933	1489 bp upstream