rs29207455 SNP Detail

Summary

• ID
  rs29207455
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101942858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCCAGCAG GTGCCTTCGT AGCTCCTTAA TTCCAAAGAC
  CCTTGAGAGG CTCATGCCAC GCCTTGATAG AATTAACTTC TCTCGGCGCT ACCACAATCA
  M
  CACGTTTCCC AAGATCCCAT TCCTAGTTTC CTTGCTTACG TACTTTTCAG GAAACCAGAA
  GTCAGGCCAT ATCCAGCCCC AGTACTCTGG CCCCTGTGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39022575	mCV24967436	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		A
ss47246861	NES11398642	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	A	C	C	C	C	C
ss138002876	ENSMUSSNP2877618	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29207455					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47246861	NES11398642	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101942858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5001	CpG island 5001	76 bp distal
Cpsf2	cleavage and polyadenylation specific factor 2	within coordinates
Ndufb1	NADH:ubiquinone oxidoreductase subunit B1	861 bp upstream
Rr387709	regulatory region 387709	within coordinates
Tssr3923	transcription start site region 3923	713 bp upstream
Tssr114729	transcription start site region 114729	1228 bp downstream
Tssr114730	transcription start site region 114730	848 bp downstream
Tssr114731	transcription start site region 114731	595 bp downstream
Tssr114732	transcription start site region 114732	582 bp downstream
Tssr117383	transcription start site region 117383	853 bp upstream
Tssr117384	transcription start site region 117384	823 bp upstream
Tssr117385	transcription start site region 117385	675 bp upstream
Tssr117386	transcription start site region 117386	653 bp upstream
Tssr117387	transcription start site region 117387	615 bp upstream
Tssr117388	transcription start site region 117388	564 bp upstream
Tssr117389	transcription start site region 117389	351 bp upstream
Tssr117390	transcription start site region 117390	320 bp upstream
Tssr117391	transcription start site region 117391	298 bp upstream
Tssr117392	transcription start site region 117392	278 bp downstream
Tssr117393	transcription start site region 117393	298 bp downstream