rs29207990 SNP Detail

Summary

• ID
  rs29207990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109594187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCTTTA AGGCCAAAAG
  AGGGCAAACT TTAGACTATA GAGATGGTAG GAGATAAGAA CCCTGAATGA TTTAAATGTG
  GAAAACATGC ACAGATATTG GGGAAAACGA CTACTAATTC TGTGGGGAAT GGACACTTGA
  TAGATAGATG TATTATTCAG TATTTGGTGC TCTCGGGCAT TTTGATTTAT TAATTCATCA
  Y
  ATATATATAT AAACACATCA ATGAATAAAG CAGCAAGCAC TGGGAGAAAG TATATCAATA
  GGTATATAGA GCAGCGAGTT TTCTAAGATG TGTGAATCAA AGAGTTTGGC CTAAATAACT
  CACAGGTATA TCAGAACAAG AAACCATCCT GGTGTAAGCC ATGCTTCTAA CACAGCTGGA
  TATATTGAAA GAACTTGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39022306	mCV24502944	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss138683330	ENSMUSSNP6042000	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29207990					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109594187 () rs orientation: forward

Symbol	Name	Function Class
Rian	RNA imprinted and accumulated in nucleus	within coordinates
Tssr115150	transcription start site region 115150	1319 bp upstream