rs29208042 SNP Detail

Summary

• ID
  rs29208042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104306024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACA AGCCAGCCAC TTAACAATAA
  Y
  GTAACCTGGT CCCCTCACTG AGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39024210	mCV24511999	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss47259078	NES11403893	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29208042					SNP	C	C	T	T	T	C	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47259078	NES11403893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104306024 () rs orientation: forward

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	within coordinates
Tssr114842	transcription start site region 114842	1349 bp downstream
Tssr114843	transcription start site region 114843	664 bp downstream
Tssr114844	transcription start site region 114844	528 bp downstream
Tssr114845	transcription start site region 114845	496 bp downstream
Tssr114846	transcription start site region 114846	407 bp downstream
Tssr114847	transcription start site region 114847	384 bp downstream
Tssr114848	transcription start site region 114848	718 bp upstream
Tssr114849	transcription start site region 114849	745 bp upstream
Tssr114850	transcription start site region 114850	762 bp upstream
Tssr114851	transcription start site region 114851	821 bp upstream
Tssr114852	transcription start site region 114852	878 bp upstream
Tssr114853	transcription start site region 114853	1089 bp upstream
Tssr114854	transcription start site region 114854	1232 bp upstream
Tssr117574	transcription start site region 117574	1104 bp downstream