rs29208081 SNP Detail

Summary

• ID
  rs29208081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:51741939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGCCTT TGAGAACCAA
  GTAGCTACTT GTGATTATCT AAGCACTTTG TCTTGGTGAC CTGTCATCTT CCCACTGAAG
  AACTCAAGCA GGTTCATAAA TACTATTTTA GTTGTTGTTT TTCCTCATCT TAAAGGGTAT
  GACAAGAATT CTTGTTTTCA TGGCTGGGAG AACAAGTCAC AACACAGCTC TTGGTGACTT
  Y
  AGCAAGTTCC ATTGTATAAT AGGAAGTGGT CCCCACCCCT TCATATCAGT GAGCGTGTGT
  GCATTGGGAA ACAAGGAAAT AAAATCTCCC TTCACAATTT GCCTACTGTC CTTTGATTAG
  GCTCAGTATT CATCATTAGC ATGTTTGAAA TTATAGTAAT TTCAGGTGAT TCCATTACTC
  TGGGAAATAA CAGGGTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39022012	mCV24841413	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss137724515	ENSMUSSNP2107019	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss324037237	CHEV_12_52796143	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29208081					SNP	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:51741939 () rs orientation: forward

Symbol	Name	Function Class
Ap4s1	adaptor-related protein complex AP-4, sigma 1	within coordinates
Rr256575	regulatory region 256575	262 bp proximal
Rr265419	regulatory region 265419	1938 bp distal