rs29208420 SNP Detail

Summary

• ID
  rs29208420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53378182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTATCTTA
  GTCATAGCAC TCAGGGGGCT GAGGTTGGAG GGTCACAAAT TTCCAGGATA GTTTTGTTAT
  GTATGTAGAG ATTTTCACTT AAACACACAC ACACGCCATA AAATAATAAA TAATAAAGAT
  AGAGGTAGCA TCATGCCTTT CTCCACTAAA CACAAATAGT CTCAGGCAGC CCTGCCGTCA
  Y
  TGGGTGATGC TCAACAGACG GGAATCTAAA ATGCTAGTGT TGTAGCTTTA AAAAAAAATT
  ATGCATATTG TCTGCCTGTC GAGAAAAGTC AAAAGTAAAC CCAGCAGTTG GATTTCACCC
  AATGAAGCAA AAAGACAGGA GGATGATTGA ATTGAACCTT AAATTCTATA GAACTAAATT
  TAATGGCGGG CACACTCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss39022317	mCV24303327	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss137751786	ENSMUSSNP5815365	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29208420					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53378182 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	783 bp distal
Rr267617	regulatory region 267617	within coordinates