rs29208930 SNP Detail

Summary

• ID
  rs29208930
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112979307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG GGTGGGGGGA GGGAGAGATG
  M
  ACTGATCTCC ACACTTAATT CTGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39026726	mCV24485582	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss138730671	ENSMUSSNP5688789	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
ss324172777	CHEV_12_114253898	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29208930					SNP	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112979307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5198	CpG island 5198	468 bp distal
Gm61130	predicted gene, 61130	1379 bp upstream
Pacs2	phosphofurin acidic cluster sorting protein 2	within coordinates
Rr473706	regulatory region 473706	1390 bp distal
Rr473707	regulatory region 473707	1144 bp distal
Rr473708	regulatory region 473708	1285 bp distal
Rr473709	regulatory region 473709	984 bp distal
Rr473710	regulatory region 473710	417 bp proximal
Tssr115451	transcription start site region 115451	1217 bp downstream
Tssr115452	transcription start site region 115452	1174 bp downstream
Tssr115453	transcription start site region 115453	1148 bp downstream
Tssr115454	transcription start site region 115454	1130 bp downstream
Tssr115455	transcription start site region 115455	1119 bp downstream
Tssr117933	transcription start site region 117933	1424 bp upstream