rs29209279 SNP Detail

Summary

• ID
  rs29209279
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112687145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA GAGAATGGGA GAGCCCGGCT
  M
  GGGAGTTGGG ACTCAGAAAC AGGAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39026656	mCV24491823	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss138726379	ENSMUSSNP3279042	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
ss324170487	CHEV_12_113958922	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29209279					SNP	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112687145 () rs orientation: forward

Symbol	Name	Function Class
Cep170b	centrosomal protein 170B	805 bp upstream
Cpgi5179	CpG island 5179	549 bp proximal
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473583	regulatory region 473583	within coordinates
Rr473584	regulatory region 473584	982 bp proximal
Rr473585	regulatory region 473585	1316 bp proximal
Rr473586	regulatory region 473586	1494 bp proximal
Tssr115398	transcription start site region 115398	1455 bp downstream
Tssr115399	transcription start site region 115399	394 bp upstream
Tssr115400	transcription start site region 115400	793 bp upstream
Tssr115401	transcription start site region 115401	1118 bp upstream
Tssr115402	transcription start site region 115402	1452 bp upstream
Tssr115403	transcription start site region 115403	1799 bp upstream
Tssr117886	transcription start site region 117886	981 bp downstream
Tssr117887	transcription start site region 117887	1019 bp downstream
Tssr117888	transcription start site region 117888	1049 bp downstream