rs29210112 SNP Detail

Summary

• ID
  rs29210112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109596161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGCTGA AGTCTGCTAA
  TCATGGAGGC TTTTTATTTG TTCTCTGGGT TTTTCAGTAT TAGGATTTGT TTGATGTCAT
  TAGCAATTTA CACATTTCAT CAATGGTAAA TATCTGGGCC ATGCACTCCC TGAGGTGGGC
  ACATGCAGTC TGAGGGAGAA GGCAATGTTA ATGTCCTTGT TGTGACTAAA GAACAGTTCC
  Y
  GGTGGCACAG TCTTATCTCC TCTAACCTGA AAAGCCACAA AGGTTCTTGA ATCTGAGATG
  AATAGGGGAT GGTCTTCGTT TCTTCCTGGA ACCTCGTTTT GAGATAGTTC ACTGTATTTA
  CTGAAATATT ACAAAACTTG GAGCGTAAAA CCCCAAATTT GAAACATTTA CCGTGTCAAG
  GATGTGAGAA ATAGGAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39028149	mCV24502933	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss51054035	NES14376524	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		T	T	T	T	T	T	T	T	T
ss138683336	ENSMUSSNP4745141	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29210112					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51054035	NES14376524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109596161 () rs orientation: forward

Symbol	Name	Function Class
Gm24564	predicted gene, 24564	1347 bp upstream
Rian	RNA imprinted and accumulated in nucleus	within coordinates
Rr387772	regulatory region 387772	1694 bp upstream
Tssr115150	transcription start site region 115150	644 bp downstream
Tssr115151	transcription start site region 115151	366 bp upstream