rs29210198 SNP Detail

Summary

• ID
  rs29210198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53377397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACGCAGG ATGCCGCTGT
  GCCAGGTGGT CCCTGGAACT CTTCCCTGGC TGCAGTAAGG AGTGTAAGCC CATCCAGGGG
  GAAGGCACAA TGAGATAGTT TCTTAGAATA ATATGTATTT TTAATATTTA AAGGTGCACC
  AGAAAGAAAA CAAATGTGTT TCAAAGCAAA AATCTGAAGG GACACTTGTG TCAGAAGTGA
  R
  GAGGCATCCA GCCATGCAGG GAAGACCATT TGCGGTGCAG ATTCCAGTGT CTCAAAACGC
  TCAAAACTCC AAGAATGAAA AATGATTCTT CTTTATCAAC CCAGTATACC CATTAATGGT
  TCTCTTATTA AGGAAACACA TATTCTGAAG GGTATTAAAA TGTGATATAT TATTCACTAT
  TTTTCATATT CTATAAAACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39028267	mCV22709041	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29210198					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53377397 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	within coordinates
Rr267617	regulatory region 267617	605 bp proximal