rs29212167 SNP Detail

Summary

• ID
  rs29212167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21422800 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATTTT TCGACTGTAT TTGGAATCTT
  R
  CATTGGATTT CGAGATCATC CGTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39029555	mCV23155906	ABI	CRAMUS_MOUSE	f	SNP		G	A						G
ss52314580	NES15371777	PERLEGEN	MM_PANEL2	r	SNP	C		T	T	T	C	C	C	C	C	C	C	C	C	C	C
ss137298160	ENSMUSSNP202218	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29212167					SNP	G	G	A	A	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314580	NES15371777	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21422800 () rs orientation: reverse

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	within coordinates
Cpgi4477	CpG island 4477	388 bp proximal
Gm49586	predicted gene, 49586	874 bp upstream
Rr463711	regulatory region 463711	1818 bp distal
Rr463712	regulatory region 463712	619 bp proximal
Rr463713	regulatory region 463713	730 bp proximal
Rr463714	regulatory region 463714	744 bp proximal
Rr463715	regulatory region 463715	885 bp proximal
Rr463716	regulatory region 463716	924 bp proximal
Rr463717	regulatory region 463717	1412 bp proximal
Tssr112932	transcription start site region 112932	891 bp upstream
Tssr112933	transcription start site region 112933	1453 bp upstream
Tssr115856	transcription start site region 115856	682 bp downstream
Tssr115857	transcription start site region 115857	702 bp downstream
Tssr115858	transcription start site region 115858	727 bp downstream
Tssr115859	transcription start site region 115859	751 bp downstream
Tssr115860	transcription start site region 115860	807 bp downstream