rs29212805 SNP Detail

Summary

• ID
  rs29212805
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110340297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GACGGCTTGT GGGCTCAGCC TGCCCCCTGC TGGTTATCAG CAGGAACGCA GCAGTCGCAA
  GCACCCCATC CGCCCAGCGC CAGACTCCTC TGGATCCTTC TAGAAGCAGC TACGCCACGG
  GCTGTCAGGC GCCTGCGCTC TTGTCCCGCA TGAATTTTTG CTGCGCAGAC CTAGTTGGGG
  AGGGCTATCT GGCTTGGAAA TGCGTGCGCC CTTGAAAGAA AACCGCCTCC TCTGTCCTCT
  GCAGCCTGGA CCATAGTTCC TGGTGCACTG TCGTCACTAA TAAGCATCCA CTTGTAGAAA
  R
  AAAAAAAAAA AGCACAGAGA TCCTCAGTAT CTAGCAGAGG TTGCACAGCC AGAAGCTGGC
  AGAGTAGGAG ATTGCAGTCC ACCTGTGTCC AGTCCAAAGC CTGTGTTTAT CTTGTATTGC
  TTGTTGGCCC TCTCAGGAGT TGGGGTCCCA GGCTAGTCTT CTGGAACCCA TAAAGAGACA
  CCTGTGTAAG GAGCCAAGGG AGTTATTTCC AAAGGACTAA ACACCACATA CCAAGTTACC
  TAGTGCACAT AGCTGTTCAA TAAGGTAGGC GCACGCCCAC GCCCATTCCC AGGATATGTA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39028672	mCV23148645	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss138689906	ENSMUSSNP1639894	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29212805					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110340297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5113	CpG island 5113	44 bp distal
Rr472872	regulatory region 472872	within coordinates
Rr472873	regulatory region 472873	263 bp distal
Rr472874	regulatory region 472874	1141 bp proximal
Tssr115196	transcription start site region 115196	1650 bp upstream