rs29213015 SNP Detail

Summary

• ID
  rs29213015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:17727592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATTATA TAACCTGGAT
  TTGGAGCACA CCTTTAGTCT TTGCTCTTGG GACACAGAGC AGGCAGATCT CTGAGTTCGA
  GGCCAGCCTG GTCTACAGAA TGAGTTCCAA GACAGCCAGG GCTACCCAGA GAAACTCTAT
  CTTGAAAACA AACAACAAAA AAACTATATA TATTTATTGG ATTTGGAAAC CAAGTCTAAA
  Y
  CAAAGACATG TATTTGTGTT TTCTATACCT GATACATGTA GCCTGAAGTA ATTTTATCCA
  GTATTGTTAG TAGGCTGTGT TTTGACTTAG CTTGTCCTGC ATGTGGCAGG CTTCAGTGTG
  GAATTTTCTA CTGTAACATC ATGTTGGTAC ACCAAGCTTT TGAATTCTGG AGCATTTGGA
  GTTTTTCACT TTTGGATTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39031463	mCV24191572	ABI	CRAMUS_MOUSE	f	SNP		C	T				C	C
ss52307878	NES15361224	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C		C	C	T		C	C	C	C
ss323926863	CHEV_12_17684397	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29213015					SNP	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52307878	NES15361224	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:17727592 () rs orientation: forward

Symbol	Name	Function Class
Rr463533	regulatory region 463533	337 bp proximal