rs29213392 SNP Detail

Summary

• ID
  rs29213392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26493209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG TCCTAGCCTC TGAAGTTCTT
  R
  AGTAAAACCC CCTTCACAGC ATTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39029889	mCV24521358	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss52328590	NES15372094	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A		G	G	A	G	A	A	A	G	G
ss137438988	ENSMUSSNP2910202	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29213392					SNP	A	A	A	G	A	A	A	G	G	G	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328590	NES15372094	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26493209 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	912 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	531 bp upstream
Tssr112999	transcription start site region 112999	578 bp upstream
Tssr113000	transcription start site region 113000	702 bp upstream
Tssr113001	transcription start site region 113001	1176 bp upstream
Tssr113002	transcription start site region 113002	1200 bp upstream
Tssr113003	transcription start site region 113003	1275 bp upstream
Tssr113004	transcription start site region 113004	1335 bp upstream
Tssr113005	transcription start site region 113005	1361 bp upstream
Tssr113006	transcription start site region 113006	1724 bp upstream
Tssr113007	transcription start site region 113007	1808 bp upstream
Tssr113008	transcription start site region 113008	1976 bp upstream
Tssr113009	transcription start site region 113009	1994 bp upstream
Tssr115902	transcription start site region 115902	340 bp upstream
Tssr115903	transcription start site region 115903	10 bp upstream
Tssr115904	transcription start site region 115904	within coordinates
Tssr115905	transcription start site region 115905	301 bp downstream
Tssr115906	transcription start site region 115906	429 bp downstream
Tssr115907	transcription start site region 115907	484 bp downstream
Tssr115908	transcription start site region 115908	524 bp downstream
Tssr115909	transcription start site region 115909	610 bp downstream
Tssr115910	transcription start site region 115910	662 bp downstream
Tssr115911	transcription start site region 115911	712 bp downstream
Tssr115912	transcription start site region 115912	726 bp downstream
Tssr115913	transcription start site region 115913	761 bp downstream
Tssr115914	transcription start site region 115914	813 bp downstream
Tssr115915	transcription start site region 115915	842 bp downstream
Tssr115916	transcription start site region 115916	899 bp downstream
Tssr115917	transcription start site region 115917	945 bp downstream
Tssr115918	transcription start site region 115918	964 bp downstream
Tssr115919	transcription start site region 115919	991 bp downstream
Tssr115920	transcription start site region 115920	1018 bp downstream
Tssr115921	transcription start site region 115921	1323 bp downstream
Tssr115922	transcription start site region 115922	1419 bp downstream
Tssr115923	transcription start site region 115923	1502 bp downstream
Tssr115924	transcription start site region 115924	1573 bp downstream
Tssr115925	transcription start site region 115925	1588 bp downstream
Tssr115926	transcription start site region 115926	1937 bp downstream
Tssr115927	transcription start site region 115927	1981 bp downstream