rs29213519 SNP Detail

Summary

• ID
  rs29213519
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29584819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAG TCAGCAGGAT GCTCCCGGTG
  K
  GCCTCTGCGG CAGCGATGTG GTCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39030399	mCV22619838	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		T
ss61585705	NES17530511	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	T		G	T	T	T		T
ss137527450	ENSMUSSNP4822770	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss323979707	CHEV_12_30219685	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29213519					SNP	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61585705	NES17530511	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29584819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4517	CpG island 4517	within coordinates
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464425	regulatory region 464425	880 bp distal
Rr464426	regulatory region 464426	195 bp distal
Rr464427	regulatory region 464427	within coordinates
Rr464428	regulatory region 464428	109 bp proximal
Tssr113063	transcription start site region 113063	1529 bp downstream
Tssr113064	transcription start site region 113064	1505 bp downstream
Tssr113065	transcription start site region 113065	1456 bp downstream
Tssr113066	transcription start site region 113066	1374 bp downstream
Tssr113067	transcription start site region 113067	1353 bp downstream
Tssr113068	transcription start site region 113068	1328 bp downstream
Tssr113069	transcription start site region 113069	179 bp downstream
Tssr113070	transcription start site region 113070	95 bp downstream
Tssr113071	transcription start site region 113071	27 bp upstream
Tssr113072	transcription start site region 113072	361 bp upstream
Tssr113073	transcription start site region 113073	389 bp upstream