rs29214088 SNP Detail

Summary

• ID
  rs29214088
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69343933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC GGCTACAAGG TCAGTAGGGC
  S
  GAGTGGGCAC GATCGCCGCC GCGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39028794	mCV22786986	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G
ss324083698	CHEV_12_70398146	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29214088					SNP	C	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69343933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4692	CpG island 4692	within coordinates
Klhdc2	kelch domain containing 2	within coordinates
Rr467020	regulatory region 467020	427 bp distal
Rr467021	regulatory region 467021	within coordinates
Tssr113629	transcription start site region 113629	1167 bp downstream
Tssr113630	transcription start site region 113630	361 bp downstream
Tssr113631	transcription start site region 113631	255 bp downstream
Tssr113632	transcription start site region 113632	226 bp downstream
Tssr113633	transcription start site region 113633	216 bp downstream
Tssr113634	transcription start site region 113634	188 bp downstream
Tssr113635	transcription start site region 113635	169 bp downstream
Tssr113636	transcription start site region 113636	240 bp upstream
Tssr116496	transcription start site region 116496	75 bp downstream