rs29214429 SNP Detail

Summary

• ID
  rs29214429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73955793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT TTAGGCCGGT AATTTCATGG
  R
  GTGGGGGCTA TATATGATGA AAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39031798	mCV24197679	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss137890817	ENSMUSSNP1357200	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss324099231	CHEV_12_75010006	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29214429					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73955793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	5 bp distal
Gm20235	predicted gene, 20235	1536 bp upstream
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467871	regulatory region 467871	1105 bp distal
Rr467872	regulatory region 467872	within coordinates
Rr467873	regulatory region 467873	1028 bp distal
Rr467874	regulatory region 467874	195 bp proximal
Tssr113838	transcription start site region 113838	1049 bp downstream
Tssr113839	transcription start site region 113839	1004 bp downstream
Tssr113840	transcription start site region 113840	953 bp downstream
Tssr113841	transcription start site region 113841	849 bp downstream
Tssr113842	transcription start site region 113842	783 bp downstream
Tssr113843	transcription start site region 113843	638 bp downstream
Tssr113844	transcription start site region 113844	593 bp upstream
Tssr113845	transcription start site region 113845	1066 bp upstream