rs29215159 SNP Detail

Summary

• ID
  rs29215159
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28777965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTA CAGTTTGCCT GACTTTCCCA
  W
  TCATGGCTGA GGTGTCATGT TGTCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss39033346	mCV22628065	ABI	CRAMUS_MOUSE	f	SNP	A	A	A			T	A
ss52346803	NES15375490	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A		A	A		A	A	T
ss137505120	ENSMUSSNP3712638	ENSEMBL	ENSEMBL_Sanger	f	SNP			A				A
ss323972618	CHEV_12_29412831	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs29215159					SNP	A	A	A	A	A	T	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52346803	NES15375490	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28777965 () rs orientation: forward

Symbol	Name	Function Class
Rr269361	regulatory region 269361	1303 bp distal
Rr269362	regulatory region 269362	348 bp distal
Trappc12	trafficking protein particle complex 12	within coordinates