rs29215367 SNP Detail

Summary

• ID
  rs29215367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53861229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATCATT CTTCCAGTCC
  TCTTCTGGAG CTTTCTAAAT TCTTCTTTCG GTCCCCAGAA CTAAATGTAT TTAAAGTTCT
  CAAAACCACG CAGAAGAAAA CAGGAAAAAT AACTTGAGTC TAAAAATCCA GTGCTGATAG
  CTCCCACTTA GAGTCAGCCG CCCCACGTGT ACAGGGAACA GTGTAGTGTA CACACATACA
  R
  GCCAGCACAC AGGCATGTTG GCATGTGCAT TCCTAGCATT GCAGAGGCAC CAGCCTTCTT
  CAGAGCCACA GAGTACAAGA CTTGCCCCCT TCAGAGTGAG TGTCTTCTCA TGGTCAGCAG
  AGACGAGGCG TGAAAGAGAC TTCAGGACTC AGGCAAAGTT GTCACAGGGA TGAAAGGCTT
  ACACACCTGA CGTGTTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39032654	mCV22363408	ABI	CRAMUS_MOUSE	f	SNP	G	A					A
ss47092514	NES11250555	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		A	A	A	A	G	A	A	A
ss137760101	ENSMUSSNP3059054	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29215367					SNP	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092514	NES11250555	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53861229 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	1029 bp distal
Rr267638	regulatory region 267638	1630 bp distal