rs29216749 SNP Detail

Summary

• ID
  rs29216749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28848777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACCACT GTCTCCTGCG
  TGAGATACGT TTCTTCGACC CGGAGCTCCG CCATTAAACT ACCTCGTGTT TTTACATCAA
  GATGGTCGTC TGTTCATGAT TCTTGGGTGC ACGCCGAATC GGGAATTGAG TGGGGGTTTC
  CTCACTAGGT TCTTTCAGAG TGTTTTGTCT GTATGTATAC ATGTATACTA CATGCTTGAC
  Y
  GGTGGCCTTG GAGGTCAGAA GAGGATGTCA GAGCCTTTGG GACTAGAGTT ACAAATAAAT
  GGTTGTGACA ATATAAACTA ACCAGTATCC GGAGCTCTTG TCTCTAGCTG CATATGTATC
  AAAAGATGGC CTAATAGGCC ATCACTTGAA AGAGAGGCCC ATTGGACTTG CAAACTTTAT
  ATGCCCCAGT ACAGGGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39032187	mCV24490376	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss137506877	ENSMUSSNP305232	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29216749					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28848777 () rs orientation: forward

Symbol	Name	Function Class
Eipr1	EARP complex and GARP complex interacting protein 1	within coordinates
Rr387013	regulatory region 387013	22 bp downstream
Rr464343	regulatory region 464343	932 bp proximal
Tssr3815	transcription start site region 3815	1919 bp upstream