rs29216806 SNP Detail

Summary

• ID
  rs29216806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53378178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTAT
  CTTAGTCATA GCACTCAGGG GGCTGAGGTT GGAGGGTCAC AAATTTCCAG GATAGTTTTG
  TTATGTATGT AGAGATTTTC ACTTAAACAC ACACACACGC CATAAAATAA TAAATAATAA
  AGATAGAGGT AGCATCATGC CTTTCTCCAC TAAACACAAA TAGTCTCAGG CAGCCCTGCC
  R
  TCACTGGGTG ATGCTCAACA GACGGGAATC TAAAATGCTA GTGTTGTAGC TTTAAAAAAA
  AATTATGCAT ATTGTCTGCC TGTCGAGAAA AGTCAAAAGT AAACCCAGCA GTTGGATTTC
  ACCCAATGAA GCAAAAAGAC AGGAGGATGA TTGAATTGAA CCTTAAATTC TATAGAACTA
  AATTTAATGG CGGGCACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss39036522	mCV24303592	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss137751783	ENSMUSSNP6274765	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29216806					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53378178 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	779 bp distal
Rr267617	regulatory region 267617	within coordinates