rs29218032 SNP Detail

Summary

• ID
  rs29218032
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11339770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATGGGTG TGCTTTGATG
  GAATGTGTAT TTCTACATGT TACTAAAATA TGTTTAATTT TTTGTTAGGT TTTATATAAC
  CGTTCCCTAA ATGAATATAA AGCATTAAAA AAAGATGGTG AACAGCTTTG TAAAAGAATT
  GAAGAACTGA AGAAAAGGTA GTACAATAAA ATTGAATTTC CATACTAACG CACTGTAATA
  M
  TTAGACACTG TGGAATGCTG CATCTTTGTG TTGGTTTTAA TGAAAGTTGC TTACAGCGGC
  TTAGGCTTTT TAAATCTTGT GTTTTTAACA TTTTTCTATG TTTGTTTTTT TACTCTCTTT
  AGTACTGATC AGTCATTAGA ACCAGAGCGA TTGGAAAGGC AAAAAAGGAT CTGCTGGTTA
  AAAGAGAAAG TCAAGGCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39036649	mCV24149012	ABI	CRAMUS_MOUSE	f	SNP		A					C		C
ss50961256	NES14423919	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C	C		A	C	C	C	C	C	A
ss137129490	ENSMUSSNP6497693	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29218032					SNP	C	A	C	A	C	C	C	A	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50961256	NES14423919	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11339770 () rs orientation: forward

Symbol	Name	Function Class
Smc6	structural maintenance of chromosomes 6	within coordinates
Tssr112797	transcription start site region 112797	123 bp downstream