rs29218397 SNP Detail

Summary

• ID
  rs29218397
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76758081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGATGG TCTCTCACAG
  ACTATCAACC CGGGTAATCG CAAGTGTAAT GGAGACACCA GTGGCGATTA AAAAGAGCAT
  AGATGCAGAA GGGAGCTTTA ACTTTGATGC TCCCCGGAAT TCTTAACAGG AAACAGCCTT
  TCTCTTGACT TGTTTGCTTG AGTGTATAAT TACGCTGTTT TCTAGGATTC ATGAGCAAAG
  K
  GTGTTGAGTT GCCAGATGTT CAAGCTTAGT ATTGGGTATT AAAGGTACGC AAAAGATATT
  TCACTGCCTG CTGCCGTCAC ACTTCTTTTG AGAGTAGGTA TTTGGACAGT AAAAATGCTA
  ATTGGGACAA AATCCACAGG TATTAAAAAG CCATAGAACT CTTCCCTCCC CTTTTGCCTG
  AGTTCTTATT ACATACTAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39036563	mCV23154818	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss137907993	ENSMUSSNP4127060	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29218397					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76758081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4785	CpG island 4785	289 bp distal
Rr468233	regulatory region 468233	1295 bp distal
Rr468234	regulatory region 468234	794 bp distal
Rr468235	regulatory region 468235	270 bp distal
Sptb	spectrin beta, erythrocytic	760 bp upstream
Tssr116745	transcription start site region 116745	1312 bp upstream
Tssr116746	transcription start site region 116746	1281 bp upstream
Tssr116747	transcription start site region 116747	1253 bp upstream
Tssr116748	transcription start site region 116748	1219 bp upstream
Tssr116749	transcription start site region 116749	1200 bp upstream
Tssr116750	transcription start site region 116750	1154 bp upstream