rs29219218 SNP Detail

Summary

• ID
  rs29219218
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32111437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGAGCG AGCACAGCCC
  GGGGAGGGTT GGCAGCATCT CCAGCTCCTC CCGCTCCTGC TCCCGCCGCC GCTGCGCCGC
  CCCCCGCCCG GCGCCCCGCC TCCGCCCGCG CGCCCACGTG ATCCCCGGAA ACCATGGCAA
  CCCGGCGGGC GGGAGCACTG CCGCCTCTCA AGTGGCCCCA GGGTGGAGGC AGCCTGAGCC
  W
  GGGGCGTGGG GCTGAGGCCG CGCGCTCCAC CTGAGCTCCC TGAGCGAATC CCACGCACCT
  TTCTCCCTGT CCCACGCAGA GTTGGTGCGG CGCAATTCCT GCTGAAACTT CAGCCTCCAC
  CTTGGTGGCT TTTCCTTTTC CTAGAATCCA ACCCCAAGAG AAACGTGCGT GGTGTCTTTT
  GTTAGTCGCA CAGCCCTACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss39035117	mCV22596107	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29219218					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32111437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4539	CpG island 4539	within coordinates
Gm51992	predicted gene, 51992	781 bp downstream
Gm60244	predicted gene, 60244	1283 bp upstream
Prkar2b	protein kinase, cAMP dependent regulatory, type II beta	142 bp upstream
Tssr113126	transcription start site region 113126	1448 bp downstream
Tssr116073	transcription start site region 116073	487 bp upstream
Tssr116074	transcription start site region 116074	230 bp upstream
Tssr116075	transcription start site region 116075	137 bp upstream
Tssr116076	transcription start site region 116076	121 bp upstream