rs29219538 SNP Detail

Summary

• ID
  rs29219538
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:3955857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGGTCAT AGAGCCAGTT GGCCAGGGAA TGAGCGTGCT
  GCCCCTCCGT CCCGCCCCGG CAGGTGCTGT AGGGTCTTCA ACAAGGTTCT GGGAAGTGCA
  K
  AGGCTTTTGT TCATACCCGT GTACGGGCTT TGCCTGCCTA TTTCTGCACC ACATCTTTGC
  TTGCTGAAGA AGCCAGAAAA GGATGTCAAA TCCCAGGGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39036810	mCV22925061	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		T
ss61337434	NES16942839	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	T	G	G	G	G	G	G	G
ss137098534	ENSMUSSNP6471221	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29219538					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337434	NES16942839	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3955857 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3a	DNA methyltransferase 3A	Intron
Tssr112532	transcription start site region 112532	1657 bp downstream
Tssr112533	transcription start site region 112533	504 bp downstream
Tssr112534	transcription start site region 112534	951 bp upstream
Tssr112535	transcription start site region 112535	1745 bp upstream
Tssr112536	transcription start site region 112536	1816 bp upstream
Tssr112537	transcription start site region 112537	1889 bp upstream
Tssr115622	transcription start site region 115622	1978 bp downstream