rs29220098 SNP Detail

Summary

• ID
  rs29220098
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107903386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGC AAAAGCTATA GACAAGGATC
  M
  GAGAGAAAAT GTAAACAAAT ACTAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39037544	mCV22713237	ABI	CRAMUS_MOUSE	f	SNP		A						A		C
ss47276559	NES11394634	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	A	A	C		C	C	C	A		C	C	C	C		A
ss138671232	ENSMUSSNP6544557	ENSEMBL	ENSEMBL_Sanger	f	SNP										C
ss324151901	CHEV_12_109175337	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29220098					SNP	A	A	A	C	A	A	C	A	C	C	C	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276559	NES11394634	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107903386 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	within coordinates
Rr472389	regulatory region 472389	1479 bp distal
Tssr117636	transcription start site region 117636	1519 bp downstream
Tssr117637	transcription start site region 117637	1545 bp downstream
Tssr117638	transcription start site region 117638	1610 bp downstream
Tssr117639	transcription start site region 117639	1625 bp downstream
Tssr117640	transcription start site region 117640	1646 bp downstream
Tssr117641	transcription start site region 117641	1666 bp downstream
Tssr117642	transcription start site region 117642	1703 bp downstream
Tssr117643	transcription start site region 117643	1821 bp downstream
Tssr117644	transcription start site region 117644	1932 bp downstream
Tssr117645	transcription start site region 117645	1963 bp downstream