rs29220125 SNP Detail

Summary

• ID
  rs29220125
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8688825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACACACACAC ACACACACAC
  W
  CTCTCTCTCT CTCTCTCTCT CTCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss39037162	mCV24145474	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss137110273	ENSMUSSNP1187558	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs29220125					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8688825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4397	CpG island 4397	1919 bp proximal
Gm56531	predicted gene, 56531	within coordinates
Rr369494	regulatory region 369494	1815 bp upstream
Rr403226	regulatory region 403226	within coordinates
Tssr112727	transcription start site region 112727	1522 bp downstream
Tssr115717	transcription start site region 115717	1786 bp upstream
Tssr115718	transcription start site region 115718	1845 bp downstream