rs29220152 SNP Detail

Summary

• ID
  rs29220152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31886800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGAAAG GCCTTTACTA
  GTAACTAAAA GAACAGTATA AGATCTAGTC ATTGCCTGCT AAATAGGAGC CTGCAGAGAT
  GGTTAGCATC AGCGAATGGC AAAGAAGAGT TTAGTAAAGC AATTCCACTT GAGGACATGT
  ATGCTGTTAC AGGACTGTCA CAAATACTTC TTTCTTTTGT CTTCATTCTT GCAGTGTTCC
  R
  AGACTGGAAA TCCAAGGAAG GTACCTCCGT ACCCTAGCCC TCAGTTTGTA GGCTTTATGG
  AGCATGGTAG CTATGAGTTA CAAGGTTGAG CTAGTGTGGG AGGAATCTGC TGACTGCATC
  TTGGGTATGC TTTGATCGTC TATAAACAGG CTAGAAATAA AAGGCTCTTG CAATATTCTT
  TTAGTTTCAG GGGACTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39037669	mCV24461541	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss50964965	NES14421231	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	A	A	A	A	A	A	G
ss137570400	ENSMUSSNP6293889	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29220152					SNP	G	G	G	G	G	G	G	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50964965	NES14421231	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31886800 () rs orientation: forward

Symbol	Name	Function Class
Cog5	component of oligomeric golgi complex 5	within coordinates
Rr387038	regulatory region 387038	within coordinates