rs29220301 SNP Detail

Summary

• ID
  rs29220301
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52844578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATTCCTTCT TTTCAGATAA TTCTAGCTTG TGTCAAAGTG GCAAAACCTT ACTAGGACAC
  TAGGTTACTA CGTCAATGTT TAAGACAGGG AGGGAAAGAA GATTCAGAGG AGAGAAGGGA
  GGAGGGAAGG GGTAAGAAAG GGAGAGAGAG GGGAGCACAT GAGAAAAGGA TCAGTGTAAG
  TCAGAGAGCC CCATGCCACC GATAGTTGCT CTTGGGAAGA TCTCAGCATG ATGGCAGAGC
  TATGGCTGGA GGCAGCCCCA GCAGAATGTC AGCCCCCAAT AGTGCCCTCC TACGGCCGGC
  M
  TTAGGGAGCA TTGTGACTAG GATCCAGAGA TAATTTATTC AGAGGAATCT TGGGGTGAGA
  GTAAACTAGA AGTTAGAGGA CACTCCTTTG TACTGCTCTC TCCAGTGCTG ATCTAGTGTG
  TGGCTTCCCT AAGTTGATGC AGGATTGAGC TTGTAAGGCA AATCAGCTGT TATTCCACAA
  ATCCTTCGCA TGTACACAGG AAGTTAGTTA AATGCTAGAA GTGAGGGGGG TAACACACCT
  ACCGTTAGAA GACACAGCTA AAAACACTGT TAAAAATTCA AATGGTTGGA CACGCAAACT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss39037198	mCV22517220	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs29220301					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52844578 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	within coordinates
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	1695 bp downstream
Rr466053	regulatory region 466053	1008 bp distal
Rr466054	regulatory region 466054	1929 bp proximal