rs29221180 SNP Detail

Summary

• ID
  rs29221180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107905365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA AAGTACATTT CAGCACGTAC
  R
  GACGGACCTT TCTCTTACTC ATGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39039846	mCV22713273	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		A
ss47276574	NES11394461	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	A		A	A	A	G		A	A	A	A		G
ss138671247	ENSMUSSNP5839862	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							A
ss324151912	CHEV_12_109177316	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29221180					SNP	G	G	G	A	G	G	A	G	A	A	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276574	NES11394461	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107905365 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	776 bp downstream
Tssr117636	transcription start site region 117636	444 bp upstream
Tssr117637	transcription start site region 117637	415 bp upstream
Tssr117638	transcription start site region 117638	357 bp upstream
Tssr117639	transcription start site region 117639	338 bp upstream
Tssr117640	transcription start site region 117640	322 bp upstream
Tssr117641	transcription start site region 117641	305 bp upstream
Tssr117642	transcription start site region 117642	267 bp upstream
Tssr117643	transcription start site region 117643	148 bp upstream
Tssr117644	transcription start site region 117644	32 bp upstream
Tssr117645	transcription start site region 117645	within coordinates
Tssr117646	transcription start site region 117646	24 bp downstream
Tssr117647	transcription start site region 117647	40 bp downstream
Tssr117648	transcription start site region 117648	100 bp downstream
Tssr117649	transcription start site region 117649	126 bp downstream
Tssr117650	transcription start site region 117650	164 bp downstream