rs29221833 SNP Detail

Summary

• ID
  rs29221833
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76618431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG AGAAAGGTGA GTGTGGGGGA
  W
  GAGCAGGCAG GTCTCCCCGG GCATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss39038970	mCV23367432	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss137906985	ENSMUSSNP499906	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29221833					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76618431 () rs orientation: forward

Symbol	Name	Function Class
Plekhg3	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	within coordinates
Rr387451	regulatory region 387451	719 bp downstream
Rr468206	regulatory region 468206	743 bp distal
Tssr113980	transcription start site region 113980	118 bp downstream
Tssr113981	transcription start site region 113981	90 bp downstream
Tssr113982	transcription start site region 113982	1447 bp upstream