rs29221892 SNP Detail

Summary

• ID
  rs29221892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32523332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTGTACAA ATTTCATGAG GTGGGGTTGT TGCAGTGTCT
  TTTGAACTTG TTTCTATTTA GTGCATGCAC ACTGACAGAT TCACTGACTG AGAAAGGCTG
  R
  CAAAGGACTC AGACATAGGG ACAAGGGTGT AGGGAAGAAA CACACACACA TACACACGTA
  CACACATACT GTCCAGCTTA TCTCTCCAAT AAACATCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39041348	mCV24719024	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148847936	ENSMUSSNP5986175	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss324311983	CHEV_13_32431218	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29221892					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32523332 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	within coordinates
Cpgi5422	CpG island 5422	394 bp distal
Gmds	GDP-mannose 4, 6-dehydratase	609 bp upstream
Rr369665	regulatory region 369665	429 bp downstream
Rr476844	regulatory region 476844	601 bp distal
Rr476845	regulatory region 476845	119 bp distal
Tssr121995	transcription start site region 121995	807 bp upstream
Tssr121996	transcription start site region 121996	785 bp upstream
Tssr121997	transcription start site region 121997	689 bp upstream