rs29221986 SNP Detail

Summary

• ID
  rs29221986
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108143908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT GCACAGTGAA AAAGGAGGGA
  K
  AAATAGCAAC TACTTCCCTC CAAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39040166	mCV25195810	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss138673133	ENSMUSSNP5012321	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss324152841	CHEV_12_109415859	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29221986					SNP	G	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108143908 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	1930 bp upstream
Cpgi5076	CpG island 5076	587 bp proximal
Rr403488	regulatory region 403488	1680 bp upstream
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	834 bp upstream
Tssr114949	transcription start site region 114949	1202 bp upstream
Tssr114950	transcription start site region 114950	1484 bp upstream
Tssr114951	transcription start site region 114951	1487 bp upstream
Tssr114952	transcription start site region 114952	1894 bp upstream
Tssr117676	transcription start site region 117676	1561 bp downstream
Tssr117677	transcription start site region 117677	1588 bp downstream