rs29222120 SNP Detail

Summary

• ID
  rs29222120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29584643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACA CATCCCAATC TTGCCTGACT
  R
  CTGAAAGCCT AGTAAACAGG AAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss39039558	mCV22619839	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss61585706	NES17530509	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	G		A	G	G
ss137527447	ENSMUSSNP5460203	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss323979706	CHEV_12_30219509	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs29222120					SNP	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61585706	NES17530509	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29584643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4517	CpG island 4517	105 bp proximal
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464425	regulatory region 464425	704 bp distal
Rr464426	regulatory region 464426	19 bp distal
Rr464427	regulatory region 464427	within coordinates
Rr464428	regulatory region 464428	285 bp proximal
Tssr113063	transcription start site region 113063	1353 bp downstream
Tssr113064	transcription start site region 113064	1329 bp downstream
Tssr113065	transcription start site region 113065	1280 bp downstream
Tssr113066	transcription start site region 113066	1198 bp downstream
Tssr113067	transcription start site region 113067	1177 bp downstream
Tssr113068	transcription start site region 113068	1152 bp downstream
Tssr113069	transcription start site region 113069	3 bp downstream
Tssr113070	transcription start site region 113070	72 bp upstream
Tssr113071	transcription start site region 113071	203 bp upstream
Tssr113072	transcription start site region 113072	537 bp upstream
Tssr113073	transcription start site region 113073	565 bp upstream