rs29222487 SNP Detail

Summary

• ID
  rs29222487
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69275106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG GGAGTGAAGT AGGAGTGGTC
  W
  GAGTGGGAAC AAGCTTCCTT TATCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39040665	mCV22872795	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss137856393	ENSMUSSNP4189925	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
ss324083390	CHEV_12_70329319	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29222487					SNP	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69275106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	46 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	137 bp upstream
Rr403319	regulatory region 403319	18 bp downstream
Rr467012	regulatory region 467012	396 bp distal
Rr467013	regulatory region 467013	within coordinates
Rr467014	regulatory region 467014	120 bp distal
Rr467015	regulatory region 467015	989 bp proximal
Rr467016	regulatory region 467016	1081 bp proximal
Tssr113624	transcription start site region 113624	300 bp upstream
Tssr116494	transcription start site region 116494	148 bp upstream