rs29222607 SNP Detail

Summary

• ID
  rs29222607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57277218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC AGCGGACTCG CGCATGCTCG
  Y
  TGCGCGCAGC CTCGTCCCCG CGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39038888	mCV22964916	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss137780782	ENSMUSSNP6791901	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29222607					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57277218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	within coordinates
Mipol1	mirror-image polydactyly 1	within coordinates
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	within coordinates
Rr265473	regulatory region 265473	within coordinates
Rr403305	regulatory region 403305	within coordinates
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113519	transcription start site region 113519	within coordinates
Tssr113520	transcription start site region 113520	33 bp upstream
Tssr113521	transcription start site region 113521	82 bp upstream