rs29222779 SNP Detail

Summary

• ID
  rs29222779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45542970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCAGGAGT CCTGAGAACC GTAGTAGCAA CGTAGCATCA
  CAGGAGCCTT TGATCACAGT TCTCTCAAAC CCGGACAGAA AGGCGTCCCC TGGAGCTGCG
  R
  GCGACAGCGG GCTGGGAGGA GCGTCGCCCA GTGGCAGAGG CCGCGACCGT GCTGGGGATT
  GGGGAGAGGA TGGGCTCCCA CCTCCCGCAG CTCCACAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39041467	mCV22908433	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss148962665	ENSMUSSNP6714923	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29222779					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45542970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5531	CpG island 5531	within coordinates
Mylip	myosin regulatory light chain interacting protein	248 bp upstream
Rr403746	regulatory region 403746	within coordinates
Rr478671	regulatory region 478671	1880 bp distal
Rr478672	regulatory region 478672	802 bp distal
Rr478673	regulatory region 478673	within coordinates
Rr478674	regulatory region 478674	18 bp proximal
Rr478675	regulatory region 478675	943 bp proximal
Rr478676	regulatory region 478676	1827 bp proximal
Tssr119571	transcription start site region 119571	240 bp upstream