rs29222922 SNP Detail

Summary

• ID
  rs29222922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTGAGTT ATAAAGTGAA CTCACGTCTA GCAAACTCAC
  CATGTAAAAG TGCAGTGATT ATAACACATC AAAGAGATAC TAACACAGAG TCTTAGGCCA
  Y
  GTATAGAACA TTTTAATTCA CAGATCATGT TACCATACAT TAGAGCGATG CCTCAGAACA
  CAGTGTAATT CCACAGAGAG ATACATATAC ATATATCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39040391	mCV24521364	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss52328596	NES15372089	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C	T	C	T		C	C	C	C		T
ss137438982	ENSMUSSNP5187922	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss323950902	CHEV_12_27127621	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29222922					SNP	C	C	C	T	C	C	C	C	C	T	C	T	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328596	NES15372089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492755 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	1643 bp distal
Rr464136	regulatory region 464136	1366 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	985 bp upstream
Tssr112999	transcription start site region 112999	1032 bp upstream
Tssr113000	transcription start site region 113000	1156 bp upstream
Tssr113001	transcription start site region 113001	1630 bp upstream
Tssr113002	transcription start site region 113002	1654 bp upstream
Tssr113003	transcription start site region 113003	1729 bp upstream
Tssr113004	transcription start site region 113004	1789 bp upstream
Tssr113005	transcription start site region 113005	1815 bp upstream
Tssr115902	transcription start site region 115902	101 bp downstream
Tssr115903	transcription start site region 115903	433 bp downstream
Tssr115904	transcription start site region 115904	450 bp downstream
Tssr115905	transcription start site region 115905	755 bp downstream
Tssr115906	transcription start site region 115906	883 bp downstream
Tssr115907	transcription start site region 115907	938 bp downstream
Tssr115908	transcription start site region 115908	978 bp downstream
Tssr115909	transcription start site region 115909	1064 bp downstream
Tssr115910	transcription start site region 115910	1116 bp downstream
Tssr115911	transcription start site region 115911	1166 bp downstream
Tssr115912	transcription start site region 115912	1180 bp downstream
Tssr115913	transcription start site region 115913	1215 bp downstream
Tssr115914	transcription start site region 115914	1267 bp downstream
Tssr115915	transcription start site region 115915	1296 bp downstream
Tssr115916	transcription start site region 115916	1353 bp downstream
Tssr115917	transcription start site region 115917	1399 bp downstream
Tssr115918	transcription start site region 115918	1418 bp downstream
Tssr115919	transcription start site region 115919	1445 bp downstream
Tssr115920	transcription start site region 115920	1472 bp downstream
Tssr115921	transcription start site region 115921	1777 bp downstream
Tssr115922	transcription start site region 115922	1873 bp downstream
Tssr115923	transcription start site region 115923	1956 bp downstream