rs29223252 SNP Detail

Summary

• ID
  rs29223252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21422537 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCGA TAGGCAATTT ACTCGCTATC
  Y
  TAGGATCCTT TAGCTTGCAA AAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39039311	mCV23155913	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss52314589	NES15371770	PERLEGEN	MM_PANEL2	r	SNP	G	A	A	A	G	G	G	G	G	G	G	G	G	G
ss137298151	ENSMUSSNP2464464	ENSEMBL	ENSEMBL_Sanger	r	SNP		A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29223252					SNP	C	T	T	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314589	NES15371770	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21422537 () rs orientation: reverse

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	within coordinates
Cpgi4477	CpG island 4477	651 bp proximal
Gm49586	predicted gene, 49586	1137 bp upstream
Tssr112932	transcription start site region 112932	1154 bp upstream
Tssr112933	transcription start site region 112933	1716 bp upstream
Tssr115856	transcription start site region 115856	945 bp downstream
Tssr115857	transcription start site region 115857	965 bp downstream
Tssr115858	transcription start site region 115858	990 bp downstream
Tssr115859	transcription start site region 115859	1014 bp downstream
Tssr115860	transcription start site region 115860	1070 bp downstream